STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1590KEGG: sus:Acid_0495 hypothetical protein. (162 aa)    
Predicted Functional Partners:
Tter_1588
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
     
 0.824
Tter_1595
KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit.
     
 0.818
Tter_1594
PFAM: Polysulphide reductase NrfD; KEGG: aba:Acid345_3002 polysulphide reductase, NrfD.
       0.800
Tter_1589
PFAM: electron transport protein SCO1/SenC; KEGG: sus:Acid_0496 electron transport protein SCO1/SenC.
       0.783
Tter_1591
KEGG: noc:Noc_1242 hypothetical protein.
       0.783
Tter_1592
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit; KEGG: sus:Acid_0493 hypothetical protein.
       0.783
Tter_1593
KEGG: sus:Acid_0492 transmembrane prediction.
       0.783
Tter_1585
TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: sus:Acid_0500 caa(3)-type oxidase, subunit IV.
       0.727
Tter_1586
PFAM: cytochrome c oxidase subunit III; KEGG: scl:sce7594 putative cytochrome-c oxidase.
       0.727
Tter_1587
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
       0.727
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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