STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1597KEGG: bbt:BBta_2344 hypothetical protein. (477 aa)    
Predicted Functional Partners:
Tter_1598
Hypothetical protein.
       0.773
Tter_0962
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: SLEI family protein.
 
     0.588
Tter_0104
PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_2693 glycosyl transferase family protein.
 
    0.548
Tter_1391
Putative transcriptional regulator; PFAM: AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: xca:xccb100_0556 hypothetical protein.
 
     0.545
Tter_1425
PFAM: VanW family protein; KEGG: bca:BCE_0672 hypothetical protein.
 
     0.479
Tter_0232
KEGG: glo:Glov_2744 hypothetical protein.
 
  
 0.472
Tter_0945
Uncharacterized membrane protein-like protein.
  
     0.466
Tter_0169
PFAM: UbiA prenyltransferase; KEGG: bcb:BCB4264_A5061 UbiA prenyltransferase; Belongs to the UbiA prenyltransferase family.
 
    0.414
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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