STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1621Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: ade:Adeh_0250 carboxyl transferase. (513 aa)    
Predicted Functional Partners:
Tter_1619
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: rec:RHECIAT_CH0003763 probable biotin carboxylase protein.
 
 0.999
Tter_1643
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 0.996
Tter_1623
TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gme:Gmet_3253 methylmalonyl-CoA epimerase.
 
  
 0.959
Tter_0002
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: gme:Gmet_1987 biotin--acetyl-CoA-carboxylase ligase.
 
 
 0.953
Tter_1622
KEGG: gsu:GSU3302 methylmalonyl-CoA mutase, putative; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
 
   
 0.825
Tter_1620
Hypothetical protein.
       0.773
Tter_1627
PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: sat:SYN_01747 UDP-N-acetylmuramate--alanine ligase.
     
 0.657
Tter_1624
Penicillin-binding protein 2; KEGG: sfu:Sfum_2589 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
       0.642
Tter_1625
KEGG: rod shape-determining protein MreD.
       0.642
Tter_1626
PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: gbm:Gbem_3539 cobyric acid synthase CobQ.
       0.642
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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