STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1652PFAM: Dak phosphatase; KEGG: bha:BH2498 hypothetical protein. (545 aa)    
Predicted Functional Partners:
Tter_1651
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bsu:BSU35480 hypothetical protein.
 
 0.998
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.837
Tter_1649
TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; methyltransferase small; KEGG: gbm:Gbem_1892 methyltransferase.
 
     0.825
Tter_2628
PFAM: protein of unknown function DUF322; KEGG: bsu:BSU24330 hypothetical protein.
 
  
 0.629
Tter_1648
Hypothetical protein; KEGG: PLEC1; plectin 1, intermediate filament binding protein 500kDa; K10388 plectin.
 
     0.621
rpmB
PFAM: ribosomal protein L28; KEGG: ribosomal protein L28; K02902 large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.578
Tter_2627
Hypothetical protein.
  
  
 0.489
plsY
Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
     0.465
Tter_1647
PFAM: protein of unknown function DUF177; KEGG: ppd:Ppro_1739 hypothetical protein.
       0.451
Tter_1666
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.431
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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