STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1677PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: sat:SYN_00474 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit. (250 aa)    
Predicted Functional Partners:
Tter_1708
PFAM: ExsB family protein; KEGG: afw:Anae109_2271 hypothetical protein.
  
 0.976
Tter_1404
PFAM: protein of unknown function DUF111; KEGG: mxa:MXAN_6689 hypothetical protein; Belongs to the LarC family.
  
 0.932
Tter_0882
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: aeh:Mlg_2033 cobalamin (vitamin B12) biosynthesis CbiM protein.
 
    0.804
Tter_1676
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mxa:MXAN_6624 AhpC/TSA family protein.
       0.773
Tter_1678
KEGG: mxa:MXAN_0451 PAP2 family protein.
       0.773
Tter_1679
KEGG: met:M446_4899 hypothetical protein.
       0.523
Tter_1081
PFAM: aldo/keto reductase; KEGG: pca:Pcar_0309 aldo/keto reductase family oxidoreductase.
 
    0.409
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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