STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1700TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bha:BH1259 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Tter_1699
KEGG: dsh:Dshi_1627 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
     
 0.728
Tter_1695
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bsu:BSU32680 hypothetical protein.
  
  
 0.658
Tter_1698
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bha:BH3467 hypothetical protein.
     
 0.618
Tter_1343
Aminotransferase class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.612
Tter_1551
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: scl:sce7329 cysteine desulfurase.
  
  
 0.612
Tter_1701
KEGG: gbm:Gbem_1182 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.
       0.534
Tter_1697
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: nmu:Nmul_A0698 FeS assembly protein SufD.
     
 0.489
Tter_0869
PFAM: nitrogen-fixing NifU domain protein; KEGG: dol:Dole_0755 NifU domain-containing protein.
  
  
 0.485
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate- independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.454
Tter_1696
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sus:Acid_7702 cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.443
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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