STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1709PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; WD40 domain protein beta Propeller; BAAT/Acyl-CoA thioester hydrolase; KEGG: oan:Oant_3086 peptidase S9 prolyl oligopeptidase active site domain protein. (594 aa)    
Predicted Functional Partners:
Tter_1298
PFAM: beta-lactamase; KEGG: bcr:BCAH187_A2346 hypothetical protein.
 
     0.578
Tter_1713
PFAM: beta-lactamase; KEGG: gsu:GSU2047 hypothetical protein.
     0.553
Tter_1710
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein.
       0.520
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.520
Tter_1214
PFAM: Amidohydrolase 3; KEGG: ilo:IL1207 metal-dependent amidohydrolase with the TIM-barrel fold.
 
     0.482
Tter_1712
Inorganic diphosphatase; KEGG: pca:Pcar_1659 putative manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2 domain protein; CBS domain containing protein; DRTGG domain protein; SMART: CBS domain containing protein.
       0.454
Tter_0464
KEGG: sse:Ssed_0948 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
  
   
 0.418
Tter_0353
Asparaginase; PFAM: peptidase T2 asparaginase 2; KEGG: spe:Spro_2851 asparaginase.
  
     0.405
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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