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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1713PFAM: beta-lactamase; KEGG: gsu:GSU2047 hypothetical protein. (347 aa)    
Predicted Functional Partners:
Tter_1513
PFAM: conserved hypothetical protein; KEGG: bha:BH0674 hypothetical protein.
  
 0.964
Tter_2605
PFAM: glycoside hydrolase family 3 domain protein; KEGG: hypothetical protein; K01207 beta-N- acetylhexosaminidase.
 
  
 0.913
Tter_0445
PFAM: glycoside hydrolase family 3 domain protein; KEGG: bsu:BSU01660 hypothetical protein.
 
  
 0.911
Tter_1712
Inorganic diphosphatase; KEGG: pca:Pcar_1659 putative manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2 domain protein; CBS domain containing protein; DRTGG domain protein; SMART: CBS domain containing protein.
       0.701
Tter_1710
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein.
       0.604
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.604
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
       0.559
Tter_1715
PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: sat:SYN_01003 appr-1-p histone processing protein.
       0.559
Tter_1709
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; WD40 domain protein beta Propeller; BAAT/Acyl-CoA thioester hydrolase; KEGG: oan:Oant_3086 peptidase S9 prolyl oligopeptidase active site domain protein.
     0.553
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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