Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Tter_1742Hypothetical protein. (665 aa)    
Predicted Functional Partners:
Tter_1735
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: scl:sce5902 hypothetical protein.
 
     0.957
Tter_1736
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: scl:sce5903 hypothetical protein.
 
 
   0.956
Tter_1740
KEGG: scl:sce7370 hypothetical protein.
 
    0.949
Tter_1739
KEGG: mxa:MXAN_6478 hypothetical protein.
 
     0.946
Tter_1741
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6475 ABC transporter, ATP-binding protein.
 
    0.946
Tter_1737
PFAM: protein of unknown function DUF58; KEGG: scl:sce5904 hypothetical protein.
 
     0.938
Tter_1738
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: scl:sce5905 methanol dehydrogenase regulator (MoxR)-like protein.
 
     0.820
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.780
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.737
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.733
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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