STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1744PFAM: UspA domain protein; KEGG: tgr:Tgr7_3238 universal stress protein. (296 aa)    
Predicted Functional Partners:
Tter_1745
PFAM: aminotransferase class I and II; KEGG: bha:BH3350 hypothetical protein.
  
    0.644
Tter_1746
Hypothetical protein.
       0.493
Tter_1743
PFAM: protein of unknown function DUF503; KEGG: mxa:MXAN_2069 hypothetical protein.
       0.491
Tter_0311
TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: sat:SYN_02919 6-O-methylguanine DNA methyltransferase.
   
    0.414
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.