STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1745PFAM: aminotransferase class I and II; KEGG: bha:BH3350 hypothetical protein. (393 aa)    
Predicted Functional Partners:
pheA
PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: mgm:Mmc1_1881 prephenate dehydratase.
 
  
 0.908
Tter_1744
PFAM: UspA domain protein; KEGG: tgr:Tgr7_3238 universal stress protein.
  
    0.644
Tter_1746
Hypothetical protein.
       0.588
Tter_2813
PFAM: biotin/lipoyl attachment domain-containing protein; transferase hexapeptide repeat containing protein; KEGG: gur:Gura_1700 serine acetyltransferase-like protein.
  
 
 0.558
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
  
  
 0.543
Tter_1187
PFAM: homocysteine S-methyltransferase; methylenetetrahydrofolate reductase; KEGG: scl:sce8634 bifunctional homocysteine S- methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
  
  
 0.419
Tter_1743
PFAM: protein of unknown function DUF503; KEGG: mxa:MXAN_2069 hypothetical protein.
       0.416
Tter_0844
PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: xac:XAC1820 bifunctional aspartokinase I/homeserine dehydrogenase I.
 
 
 0.407
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.405
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.