STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1773KEGG: bha:BH1004 hypothetical protein. (546 aa)    
Predicted Functional Partners:
Tter_1774
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC3591 ABC transporter ATP-binding protein.
 
  
 0.890
Tter_1775
PFAM: regulatory protein TetR; KEGG: bbt:BBta_0873 TetR family transcriptional regulator.
 
     0.772
Tter_2671
PFAM: ABC-2 type transporter; KEGG: sdy:SDY_0811 hypothetical protein.
 
     0.718
Tter_2673
PFAM: ABC transporter related; LytTr DNA-binding region; SMART: AAA ATPase; KEGG: bce:BC5286 transcriptional regulator.
 
     0.694
Tter_2710
KEGG: gsu:GSU0719 hypothetical protein.
  
     0.663
Tter_2335
Hypothetical protein.
  
     0.651
Tter_0696
PFAM: SMC domain protein; KEGG: sun:SUN_0726 DNA double-strand break repair protein.
  
     0.624
Tter_2540
KEGG: sus:Acid_2929 major facilitator transporter.
  
     0.624
Tter_0390
KEGG: gur:Gura_1568 hypothetical protein.
  
     0.616
Tter_2027
KEGG: ank:AnaeK_0999 hypothetical protein.
  
     0.556
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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