STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1791PFAM: conserved hypothetical protein; KEGG: noc:Noc_1947 hypothetical protein. (346 aa)    
Predicted Functional Partners:
Tter_1657
PFAM: conserved hypothetical protein; KEGG: gme:Gmet_1389 hypothetical protein.
  
     0.740
Tter_1792
Putative transmembrane anti-sigma factor; KEGG: afw:Anae109_3624 hypothetical protein.
       0.714
Tter_0169
PFAM: UbiA prenyltransferase; KEGG: bcb:BCB4264_A5061 UbiA prenyltransferase; Belongs to the UbiA prenyltransferase family.
 
     0.692
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.662
Tter_0944
PFAM: glycosyl transferase family 39; KEGG: xop:PXO_04470 dolichyl-phosphate-mannose- protein mannosyltransferase.
 
  
 0.600
Tter_1038
PFAM: conserved hypothetical protein; KEGG: gur:Gura_2685 hypothetical protein.
  
     0.579
Tter_0393
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: scl:sce7003 NDP-sugar oxidoreductase.
 
     0.573
Tter_1793
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: tgr:Tgr7_1083 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.564
Tter_1391
Putative transcriptional regulator; PFAM: AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: xca:xccb100_0556 hypothetical protein.
 
     0.536
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
       0.482
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.