STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1807PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rec:RHECIAT_PC0000985 putative xylose isomerase domain protein. (277 aa)    
Predicted Functional Partners:
Tter_0156
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH0710 hypothetical protein.
  
    0.786
Tter_1808
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:RL4246 GFO/IDH/MocA family oxidoreductase.
 
    0.717
Tter_1938
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_1695 sugar phosphate isomerases/epimerases.
  
     0.634
Tter_1809
KEGG: scl:sce2260 putative secreted protein.
       0.602
Tter_1112
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: swi:Swit_1902 xylose isomerase domain- containing protein.
  
     0.573
Tter_0895
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_1577 xylose isomerase domain- containing protein.
  
     0.524
Tter_1910
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMa1353 putative epimerase; Belongs to the hyi family.
  
     0.494
Tter_1524
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sus:Acid_1483 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
  
  
 0.467
Tter_1882
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_2175 oxidoreductase domain- containing protein.
  
    0.459
Tter_0446
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: lch:Lcho_3206 oxidoreductase domain- containing protein.
  
    0.454
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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