STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1857PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_0704 luciferase family protein. (287 aa)    
Predicted Functional Partners:
Tter_1856
PFAM: nitroreductase; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gsu:GSU2525 nitroreductase family protein.
  
  
 0.795
Tter_1858
KEGG: dps:DP1728 hypothetical protein.
       0.757
Tter_1862
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: cps:CPS_4045 putative F420-dependent oxidoreductase.
 
   
 0.609
Tter_1864
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: rpb:RPB_4407 LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.606
fbiD
Protein of unknown function DUF121; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
 
   
 0.458
Tter_1859
KEGG: sus:Acid_3796 hypothetical protein.
       0.450
Tter_1861
PFAM: Luciferase-like monooxygenase; KEGG: sme:SM_b20100 putative dehydrogenase protein.
 
    
0.440
Tter_1854
Hypothetical protein.
       0.428
Tter_1855
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: mes:Meso_1800 peptidase M23B.
       0.428
Tter_2223
PFAM: NADPH-dependent FMN reductase; KEGG: rpi:Rpic_1212 NADPH-dependent FMN reductase.
 
 
 0.403
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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