Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tter_1872KEGG: sus:Acid_2208 magnesium protoporphyrin chelatase, putative. (464 aa)    
Predicted Functional Partners:
Tter_1871
KEGG: aba:Acid345_3257 von Willebrand factor, type A.
    0.972
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.919
Tter_1736
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: scl:sce5903 hypothetical protein.
  
 
 0.904
Tter_2554
Flavodoxin-like protein; KEGG: sbc:SbBS512_E4320 protoporphyrinogen oxidase.
     
  0.900
Tter_2562
Flavodoxin-like protein; KEGG: pmu:PM1499 protoporphyrinogen oxidase.
     
  0.900
Tter_0994
Hypothetical protein.
 
     0.539
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
  
 0.503
Tter_0006
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: met:M446_3854 FAD dependent oxidoreductase.
 
  
 0.450
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
   
  
 0.421
Tter_1300
PFAM: UbiA prenyltransferase; KEGG: dol:Dole_2097 UbiA prenyltransferase.
  
  
 0.403
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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