STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1877PFAM: protein of unknown function DUF87; KEGG: efe:EFER_3096 putative nucleoside triphosphate hydrolase. (560 aa)    
Predicted Functional Partners:
Tter_1875
Hypothetical protein.
 
 
 
 0.986
Tter_1873
PFAM: metallophosphoesterase; KEGG: gsu:GSU1724 nuclease SbcCD, D subunit, putative.
 
     0.935
Tter_1874
PFAM: SMC domain protein; KEGG: SMC domain protein.
 
   
 0.935
Tter_1876
Hypothetical protein.
       0.781
Tter_2673
PFAM: ABC transporter related; LytTr DNA-binding region; SMART: AAA ATPase; KEGG: bce:BC5286 transcriptional regulator.
  
     0.523
Tter_2266
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2048 xylose isomerase domain- containing protein.
  
     0.518
Tter_1773
KEGG: bha:BH1004 hypothetical protein.
  
     0.503
Tter_0443
PFAM: Spermine synthase; KEGG: predicted protein; K06983.
  
     0.483
Tter_0697
PFAM: metallophosphoesterase; KEGG: pca:Pcar_1060 DNA repair exonuclease.
 
     0.479
Tter_2540
KEGG: sus:Acid_2929 major facilitator transporter.
  
     0.471
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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