STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1883PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: afw:Anae109_1606 FAD linked oxidase domain- containing protein. (462 aa)    
Predicted Functional Partners:
Tter_2240
PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_0704 luciferase family protein.
 
     0.922
Tter_1882
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_2175 oxidoreductase domain- containing protein.
  
    0.526
Tter_0654
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: sat:SYN_02637 electron transfer flavoprotein alpha-subunit.
  
 
 0.518
Tter_0655
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit.
  
 
 0.518
Tter_2859
PFAM: transcriptional activator domain; TPR repeat- containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.
 
     0.498
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 0.492
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
     
 0.481
Tter_1124
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; TPR repeat- containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.
 
     0.475
Tter_1881
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: hypothetical protein.
  
    0.466
Tter_1592
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit; KEGG: sus:Acid_0493 hypothetical protein.
   
   0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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