STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1898TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: pmy:Pmen_3758 CRISPR-associated CSE4 family protein. (382 aa)    
Predicted Functional Partners:
Tter_1899
TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: pmy:Pmen_3757 CRISPR-associated Cas5e family protein.
 
 
 0.997
Tter_1896
TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: sfu:Sfum_2825 CRISPR-associated protein, CSE1 family.
 
 
 0.996
Tter_1897
TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: sfu:Sfum_2826 CRISPR-associated protein, CSE2 family.
 
 
 0.995
Tter_1900
TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: scl:sce0560 hypothetical protein.
 
 
 0.994
Tter_1895
TIGRFAM: CRISPR-associated helicase Cas3; SMART: DEAD-like helicase; KEGG: ppd:Ppro_2343 CRISPR-associated helicase Cas3.
 
 
 0.970
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.966
Tter_1902
TIGRFAM: CRISPR-associated protein Cas2; KEGG: dds:Ddes_0929 CRISPR-associated protein Cas2.
 
  
 0.958
Tter_2428
TIGRFAM: CRISPR-associated helicase Cas3; KEGG: dvu:DVUA0129 CRISPR-associated helicase Cas3 domain-containing protein.
 
 
 0.792
Tter_0235
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
   
  
 0.411
Tter_1506
PFAM: CcmE/CycJ protein; KEGG: dds:Ddes_2369 cytochrome c-type biogenesis protein CcmE.
   
  
 0.411
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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