STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1911Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bur:Bcep18194_A3230 MarR family transcriptional regulator. (164 aa)    
Predicted Functional Partners:
Tter_1912
KEGG: xac:XAC3665 hypothetical protein.
       0.773
Tter_1913
PFAM: peptidase M28; KEGG: bra:BRADO0660 putative aminopeptidase; putative exported protein.
       0.655
Tter_1910
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMa1353 putative epimerase; Belongs to the hyi family.
       0.540
Tter_1909
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein.
       0.452
Tter_1907
KEGG: hypothetical protein.
       0.436
Tter_1908
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: rle:RL0824 putative oxidoreductase.
       0.436
Tter_1914
Hypothetical protein; KEGG: rpc:RPC_3499 O-methyltransferase family protein.
       0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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