STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1927PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000423 probable oligopeptide ABC transporter, substrate-binding protein. (735 aa)    
Predicted Functional Partners:
Tter_1804
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL100277 putative permease component of ABC transporter.
 
 
 0.852
Tter_1803
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_4487 binding-protein-dependent transport systems inner membrane component.
 
 
 0.848
Tter_2529
PFAM: Carbohydrate-binding family 9; KEGG: bbt:BBta_1040 hypothetical protein.
  
     0.710
Tter_1143
PFAM: PKD domain containing protein; coagulation factor 5/8 type domain protein; SMART: PKD domain containing protein; Parallel beta- helix repeat; KEGG: hypothetical protein.
  
     0.663
Tter_2748
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000149 putative ABC transporter, permease protein.
 
 
 0.620
Tter_2747
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4300 peptide ABC transporter, permease protein.
 
 
 0.572
Tter_2607
PFAM: NAD-dependent epimerase/dehydratase; KEGG: cak:Caul_1797 NAD-dependent epimerase/dehydratase.
  
     0.569
Tter_1926
PFAM: aminoglycoside phosphotransferase; KEGG: mpo:Mpop_1539 aminoglycoside phosphotransferase.
 
     0.560
Tter_2744
KEGG: hypothetical protein.
  
     0.550
Tter_0334
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: glo:Glov_1076 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
    0.534
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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