STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1928Hypothetical protein; KEGG: sus:Acid_2874 transmembrane prediction. (293 aa)    
Predicted Functional Partners:
Tter_1930
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: oxidoreductase protein.
     0.900
Tter_1929
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: kpe:KPK_2481 muconate cycloisomerase.
       0.773
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
    
 
 0.719
Tter_1107
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: endonuclease protein.
  
    0.672
Tter_1100
PFAM: FG-GAP repeat protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: bha:BH1116 hypothetical protein.
  
     0.645
Tter_1105
PFAM: oxidoreductase domain protein; KEGG: bja:blr2840 oxidoreductase.
  
     0.634
Tter_1106
PFAM: protein of unknown function DUF993; KEGG: atc:AGR_L_3385 hypothetical protein.
 
   
 0.632
Tter_1470
KEGG: rce:RC1_2168 hypothetical protein.
  
     0.522
Tter_0201
PFAM: Acetyl xylan esterase; KEGG: mlo:mlr6993 acetyl xylan esterase.
  
     0.454
Tter_2304
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: aav:Aave_4253 transcriptional regulator, LacI family.
 
      0.446
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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