Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tter_1930PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: oxidoreductase protein. (355 aa)    
Predicted Functional Partners:
Tter_1928
Hypothetical protein; KEGG: sus:Acid_2874 transmembrane prediction.
     0.899
Tter_1929
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: kpe:KPK_2481 muconate cycloisomerase.
       0.773
Tter_1937
PFAM: oxidoreductase domain protein; KEGG: bha:BH0708 hypothetical protein.
  
     0.759
Tter_1882
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_2175 oxidoreductase domain- containing protein.
  
     0.580
Tter_1931
Hypothetical protein.
       0.427
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); nucleic acid binding OB- fold tRNA/helicase-type; KEGG: bsu:BSU00820 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.414
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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