STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1946PFAM: Phytanoyl-CoA dioxygenase; KEGG: similar to phytanoyl-CoA hydroxylase (Refsum disease). (372 aa)    
Predicted Functional Partners:
Tter_2355
PFAM: Phytanoyl-CoA dioxygenase; KEGG: bce:BC5091 SnoK-like protein.
  
     0.774
Tter_2744
KEGG: hypothetical protein.
  
     0.754
Tter_1160
KEGG: rle:RL3145 putative dehydrogenases.
  
     0.730
Tter_1474
PFAM: oxidoreductase domain protein; aldo/keto reductase; Semialdehyde dehydrogenase NAD - binding; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: mlo:mlr6441 oxidoreductase.
 
    0.695
Tter_2042
PFAM: extracellular solute-binding protein family 1; KEGG: sit:TM1040_3216 extracellular solute-binding protein.
  
     0.630
Tter_1926
PFAM: aminoglycoside phosphotransferase; KEGG: mpo:Mpop_1539 aminoglycoside phosphotransferase.
 
    0.611
Tter_2402
PFAM: glycoside hydrolase family 76; KEGG: hypothetical protein.
  
     0.549
Tter_1944
PFAM: Endoribonuclease L-PSP; KEGG: rce:RC1_1921 endoribonuclease L-PSP, putative.
  
    0.531
Tter_1945
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sme:SMa2133 hypothetical protein.
  
    0.528
Tter_2749
PFAM: extracellular solute-binding protein family 5; KEGG: dsh:Dshi_3011 extracellular solute-binding protein.
  
     0.500
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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