STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1948TIGRFAM: CRISPR-associated protein, Cmr5 family; KEGG: sat:SYN_02248 putative cytoplasmic protein. (132 aa)    
Predicted Functional Partners:
Tter_1949
TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1793 CRISPR-associated RAMP protein, Cmr4 family.
 
 
 
 0.993
Tter_1951
TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: tgr:Tgr7_1791 CRISPR-associated protein, Crm2 family.
 
 
 
 0.992
Tter_1947
TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1795 CRISPR-associated RAMP protein, Cmr6 family.
 
 
 
 0.989
Tter_1952
TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1790 CRISPR-associated RAMP protein, Cmr1 family.
 
 
 
 0.977
Tter_1950
TIGRFAM: CRISPR-associated protein, Cmr3 family; KEGG: tgr:Tgr7_1792 hypothetical protein.
 
   
 0.959
Tter_1953
TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; KEGG: sfu:Sfum_1352 CRISPR-associated protein, TM1812 family.
 
     0.933
Tter_1954
TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; KEGG: sfu:Sfum_1352 CRISPR-associated protein, TM1812 family.
 
     0.921
Tter_2427
TIGRFAM: CRISPR-associated protein Cas5.
 
   
 0.519
cas1-2
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.480
Tter_1955
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: mes:Meso_0996 glycerophosphoryl diester phosphodiesterase.
       0.475
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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