STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1960Hypothetical protein; KEGG: rfr:Rfer_1106 glycoside hydrolase family protein. (428 aa)    
Predicted Functional Partners:
Tter_1961
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL90190 putative permease component of ABC transporter.
       0.773
Tter_1962
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1635 sugar ABC transporter, permease.
       0.773
Tter_1963
PFAM: extracellular solute-binding protein family 1; KEGG: rle:RL2325 putative solute-binding component of ABC transporter.
       0.773
Tter_1525
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: ccs:CCNA_01359 myo-inositol catabolism protein IolB.
   
    0.686
Tter_2408
Superfamily I DNA and RNA helicase and helicase subunits-like protein; KEGG: ppw:PputW619_2280 AAA ATPase.
  
    0.635
Tter_1964
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: cti:RALTA_B1650 putative transcriptional regulator, GntR family.
       0.451
Tter_1965
PFAM: aminotransferase class-III; KEGG: dal:Dalk_2855 glutamate-1-semialdehyde-2,1- aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.451
Tter_1966
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aba:Acid345_0642 short-chain dehydrogenase/reductase SDR.
       0.443
Tter_1639
PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: bha:BH2516 fibronectin/fibrinogen-binding protein.
   
    0.410
Tter_2127
PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: par:Psyc_2081 hypothetical protein.
  
     0.410
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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