STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1964Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: cti:RALTA_B1650 putative transcriptional regulator, GntR family. (229 aa)    
Predicted Functional Partners:
Tter_1996
PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mlo:mll6911 transcriptional regulator.
 
  
 0.810
Tter_1965
PFAM: aminotransferase class-III; KEGG: dal:Dalk_2855 glutamate-1-semialdehyde-2,1- aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.773
Tter_1966
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aba:Acid345_0642 short-chain dehydrogenase/reductase SDR.
       0.757
Tter_2510
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: bha:BH2137 IclR family transcriptional regulator.
  
  
 0.673
Tter_1960
Hypothetical protein; KEGG: rfr:Rfer_1106 glycoside hydrolase family protein.
       0.451
Tter_1961
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL90190 putative permease component of ABC transporter.
       0.451
Tter_1962
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1635 sugar ABC transporter, permease.
       0.451
Tter_1963
PFAM: extracellular solute-binding protein family 1; KEGG: rle:RL2325 putative solute-binding component of ABC transporter.
       0.451
Tter_1967
KEGG: hypothetical protein.
       0.423
Tter_0187
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_3022 acetolactate synthase, small subunit.
   
    0.418
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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