STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1965PFAM: aminotransferase class-III; KEGG: dal:Dalk_2855 glutamate-1-semialdehyde-2,1- aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (432 aa)    
Predicted Functional Partners:
Tter_1340
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: gur:Gura_0347 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 
 0.986
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.983
Tter_0352
PFAM: aminotransferase class-III; KEGG: sil:SPOA0312 glutamate-1-semialdehyde 2,1- aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.918
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dal:Dalk_2855 glutamate-1-semialdehyde-2,1- aminomutase.
  
  
 
0.912
Tter_1644
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: bsu:BSU15900 acyl-carrier-protein S- malonyltransferase.
    
 0.896
Tter_0013
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: gur:Gura_1876 malonyl CoA-acyl carrier protein transacylase.
    
 0.884
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.862
Tter_1964
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: cti:RALTA_B1650 putative transcriptional regulator, GntR family.
       0.773
Tter_1966
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aba:Acid345_0642 short-chain dehydrogenase/reductase SDR.
     
 0.758
Tter_0014
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.603
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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