STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1978PFAM: Creatininase; KEGG: aba:Acid345_1632 creatininase. (265 aa)    
Predicted Functional Partners:
Tter_1977
PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_0704 luciferase family protein.
       0.620
Tter_1979
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: dvm:DvMF_2320 6-phosphogluconate dehydrogenase NAD-binding.
       0.547
Tter_1844
PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2008 glycosyl transferase family protein.
  
  
 0.545
Tter_2189
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: psa:PST_0048 glycosyl transferase, group 2 family protein.
  
  
 0.545
Tter_2800
PFAM: glycosyl transferase family 2; KEGG: aeh:Mlg_2352 glycosyl transferase family protein.
  
  
 0.545
Tter_1980
PFAM: Cupin 2 conserved barrel domain protein; KEGG: bra:BRADO3800 hypothetical protein.
       0.473
Tter_1976
PFAM: aldo/keto reductase; KEGG: scl:sce5264 putative sugar-phosphate dehydrogenase.
       0.417
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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