STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1980PFAM: Cupin 2 conserved barrel domain protein; KEGG: bra:BRADO3800 hypothetical protein. (130 aa)    
Predicted Functional Partners:
Tter_1979
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: dvm:DvMF_2320 6-phosphogluconate dehydrogenase NAD-binding.
       0.667
Tter_1978
PFAM: Creatininase; KEGG: aba:Acid345_1632 creatininase.
       0.473
Tter_1968
PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pag:PLES_32751 putative transcriptional regulator.
 
   0.467
Tter_1973
KEGG: rle:RL2357 hypothetical protein.
 
     0.449
Tter_1972
PFAM: aldo/keto reductase; KEGG: ade:Adeh_3218 aldo/keto reductase.
 
     0.444
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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