STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1998KEGG: hypothetical protein. (528 aa)    
Predicted Functional Partners:
Tter_1996
PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mlo:mll6911 transcriptional regulator.
       0.773
Tter_1997
PFAM: oxidoreductase domain protein; KEGG: acr:Acry_1061 oxidoreductase domain- containing protein.
       0.773
Tter_1907
KEGG: hypothetical protein.
  
     0.715
Tter_2666
KEGG: atc:AGR_L_146 hypothetical protein.
  
     0.619
Tter_1200
KEGG: ypm:YP_2290 hypothetical protein.
   
 
 0.583
Tter_1680
PFAM: protein of unknown function DUF255; KEGG: dal:Dalk_2829 protein of unknown function DUF255.
   
 
 0.583
Tter_1999
PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr7000 ABC transporter, periplasmic binding-protein.
       0.550
Tter_1995
PFAM: Hemolysin-type calcium-binding region; KEGG: pde:Pden_2124 hemolysin-type calcium-binding region.
     
 0.504
Tter_0621
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfu:Sfum_1980 xylose isomerase domain protein TIM barrel.
  
     0.434
Tter_1112
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: swi:Swit_1902 xylose isomerase domain- containing protein.
  
     0.433
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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