STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1999PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr7000 ABC transporter, periplasmic binding-protein. (468 aa)    
Predicted Functional Partners:
Tter_2001
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_4664 binding-protein-dependent transport systems inner membrane component.
 
   0.789
Tter_2000
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02025 multiple sugar transport system permease protein.
 
   0.783
Tter_0206
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3847 ABC transporter (permease).
  
   0.718
Tter_0207
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3846 ABC transporter (permease).
  
   0.702
Tter_2473
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC transporter membrane spanning protein (sugar); K02025 multiple sugar transport system permease protein.
  
   0.642
Tter_0126
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1864 hypothetical protein.
  
     0.631
Tter_2004
PFAM: ribulose-phosphate 3-epimerase; KEGG: bcy:Bcer98_2512 ribulose-phosphate 3- epimerase.
   
   0.615
Tter_2002
TIGRFAM: mevalonate kinase; PFAM: GHMP kinase domain protein; GHMP kinase; KEGG: scl:sce4205 hypothetical protein.
       0.586
Tter_2003
PFAM: cyclase family protein; KEGG: bcz:BCZK0332 cyclase.
       0.586
Tter_2005
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: atc:AGR_pAT_578 phosphoglycerate dehydrogenase (SerA).
       0.586
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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