STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2004PFAM: ribulose-phosphate 3-epimerase; KEGG: bcy:Bcer98_2512 ribulose-phosphate 3- epimerase. (229 aa)    
Predicted Functional Partners:
Tter_1528
PFAM: Transketolase domain protein; KEGG: rpc:RPC_3879 transketolase-like.
 
  
 0.964
Tter_0415
PFAM: Transketolase central region; Transketolase domain protein; KEGG: scl:sce8467 transketolase.
 
 0.962
Tter_1527
PFAM: Transketolase central region; Transketolase domain protein; KEGG: gur:Gura_0492 transketolase, central region.
 
 
 0.954
Tter_2006
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmr:Mmar10_0232 2-deoxy-D-gluconate 3- dehydrogenase.
    
 0.949
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
 0.939
Tter_0833
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.932
Tter_2482
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: YALI0F01628p; K01808 ribose 5-phosphate isomerase B.
 
 
 0.932
Tter_0287
KEGG: pca:Pcar_0240 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
  
 
0.915
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: aba:Acid345_0904 xylulokinase.
    
 0.911
Tter_2196
PFAM: carbohydrate kinase FGGY; KEGG: rde:RD1_3760 xylulose kinase, putative; Belongs to the FGGY kinase family.
    
 0.911
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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