STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2027KEGG: ank:AnaeK_0999 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Tter_1728
KEGG: scl:sce1965 hypothetical protein.
  
     0.695
Tter_1190
KEGG: aba:Acid345_2864 hypothetical protein.
  
     0.667
Tter_0553
KEGG: acp:A2cp1_0251 FAD dependent oxidoreductase.
  
     0.614
Tter_1300
PFAM: UbiA prenyltransferase; KEGG: dol:Dole_2097 UbiA prenyltransferase.
  
     0.587
Tter_1773
KEGG: bha:BH1004 hypothetical protein.
  
     0.556
Tter_2671
PFAM: ABC-2 type transporter; KEGG: sdy:SDY_0811 hypothetical protein.
  
     0.546
Tter_2028
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; cobalamin B12- binding domain protein; SMART: regulatory protein MerR; KEGG: mxa:MXAN_0904 B12 binding domain/transcriptional regulator, MerR family.
       0.517
Tter_2540
KEGG: sus:Acid_2929 major facilitator transporter.
  
     0.511
Tter_2673
PFAM: ABC transporter related; LytTr DNA-binding region; SMART: AAA ATPase; KEGG: bce:BC5286 transcriptional regulator.
  
     0.481
Tter_2029
PFAM: Hemolysin-type calcium-binding region; KEGG: gur:Gura_2550 putative outer membrane adhesin like protein.
       0.432
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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