STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2029PFAM: Hemolysin-type calcium-binding region; KEGG: gur:Gura_2550 putative outer membrane adhesin like protein. (148 aa)    
Predicted Functional Partners:
Tter_1995
PFAM: Hemolysin-type calcium-binding region; KEGG: pde:Pden_2124 hemolysin-type calcium-binding region.
 
 
 0.804
Tter_0892
Hypothetical protein; KEGG: mmr:Mmar10_1905 putative outer membrane adhesin like proteiin.
 
 
 0.801
Tter_2030
TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24 and S26 domain protein; KEGG: signal peptidase; K03100 signal peptidase I.
     
 0.778
Tter_2031
Hypothetical protein.
       0.741
Tter_2028
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; cobalamin B12- binding domain protein; SMART: regulatory protein MerR; KEGG: mxa:MXAN_0904 B12 binding domain/transcriptional regulator, MerR family.
       0.631
Tter_0797
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcb:BCB4264_A3893 stage III sporulation protein E; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.446
Tter_2032
Hypothetical protein; KEGG: sme:SMa2103 oxidoreductase.
       0.444
Tter_2027
KEGG: ank:AnaeK_0999 hypothetical protein.
       0.432
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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