STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2035PFAM: glycoside hydrolase 15-related; KEGG: noc:Noc_1617 glycoside hydrolase. (595 aa)    
Predicted Functional Partners:
Tter_0839
Alpha,alpha-trehalose-phosphate synthase (UDP- forming); PFAM: glycosyl transferase family 20; KEGG: pca:Pcar_3112 trehalose-6-phosphate synthase.
 
   
 0.791
Tter_2034
PFAM: GCN5-related N-acetyltransferase; KEGG: bca:BCE_2099 acetyltransferase.
       0.773
Tter_0840
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
   
 0.766
Tter_2033
PFAM: Chlorite dismutase; KEGG: bcy:Bcer98_3909 putative heme peroxidase.
       0.628
nfo
Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
 
      0.616
Tter_2032
Hypothetical protein; KEGG: sme:SMa2103 oxidoreductase.
       0.525
Tter_2036
PFAM: CsbD family protein; KEGG: hypothetical protein.
       0.520
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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