STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2039PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: sus:Acid_3742 alpha-L-rhamnosidase. (955 aa)    
Predicted Functional Partners:
Tter_2038
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.899
Tter_2037
KEGG: hypothetical protein.
 
     0.847
Tter_2040
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SM_b20969 putative sugar uptake ABC transporter permease protein.
       0.774
Tter_2041
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1865 sugar transport system (permease) (binding protein dependent transporter).
       0.774
Tter_0622
KEGG: smd:Smed_2312 hypothetical protein.
 
     0.697
Tter_0878
KEGG: alpha-glucan phosphorylase; K00688 starch phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 
 0.660
Tter_2042
PFAM: extracellular solute-binding protein family 1; KEGG: sit:TM1040_3216 extracellular solute-binding protein.
       0.608
Tter_0211
PFAM: protein of unknown function DUF608; KEGG: sus:Acid_5570 hypothetical protein.
  
  
 0.588
Tter_1903
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: rle:pRL100274 putative fucosidase.
  
     0.587
Tter_2318
KEGG: sus:Acid_1828 hypothetical protein.
 
     0.579
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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