STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2046PFAM: Squalene/phytoene synthase; KEGG: bav:BAV2418 phytoene synthase. (279 aa)    
Predicted Functional Partners:
Tter_2045
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_0895 phytoene desaturase.
  
 0.997
Tter_1365
PFAM: Polyprenyl synthetase; KEGG: nmn:NMCC_1817 octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.915
Tter_1465
PFAM: Polyprenyl synthetase; KEGG: GGPS; geranylgeranyl diphosphate synthase; K00795 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.915
Tter_2047
PFAM: UbiA prenyltransferase; KEGG: afr:AFE_0592 4-hydroxybenzoate polyprenyl transferase.
 
  
 0.898
Tter_0006
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: met:M446_3854 FAD dependent oxidoreductase.
 
  
 0.878
Tter_1516
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.833
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 0.827
Tter_0913
KEGG: dvm:DvMF_1440 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.788
nuoH
NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
   
 
  0.761
Tter_1350
PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: mxa:MXAN_3793 30S ribosomal protein S1.
   
    0.666
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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