STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2051PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PA0000143 putative sugar ABC transporter, ATP-binding protein. (536 aa)    
Predicted Functional Partners:
Tter_2052
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter.
 
   0.957
Tter_2053
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02026 multiple sugar transport system permease protein.
 
   0.956
Tter_2490
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2013 binding-protein-dependent transport systems inner membrane component.
  
   0.760
Tter_2054
KEGG: rec:RHECIAT_PA0000140 hypothetical protein.
       0.757
Tter_2489
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2012 binding-protein-dependent transport systems inner membrane component.
  
   0.754
Tter_2055
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: csa:Csal_0359 alcohol dehydrogenase GroES- like protein.
 
     0.752
Tter_2690
KEGG: sugar ABC transporter.
 
  
 0.696
Tter_2473
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC transporter membrane spanning protein (sugar); K02025 multiple sugar transport system permease protein.
  
   0.642
Tter_2050
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; regulatory protein Crp; KEGG: vfi:VF_A0400 transcriptional repressor.
 
     0.611
Tter_2056
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: hypothetical protein; K00008 L-iditol 2- dehydrogenase.
       0.586
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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