STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2078PFAM: permease; KEGG: bph:Bphy_1637 permease. (354 aa)    
Predicted Functional Partners:
Tter_2079
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dps:DP3099 hypothetical protein.
  
    0.643
Tter_2080
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aba:Acid345_3927 thioredoxin-like.
       0.572
Tter_2081
Hypothetical protein.
       0.572
Tter_2077
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dsh:Dshi_3967 ArsR family transcriptional regulator.
 
  
 0.570
Tter_2082
Hypothetical protein; KEGG: bte:BTH_I2024 pseudouridine synthase family protein.
       0.522
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
     0.485
Tter_0532
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bsu:BSU06300 spore coat protein (outer).
  
  
 0.453
Tter_2149
KEGG: oca:OCAR_7249 copper-containing nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 3; blue (type 1) copper domain protein; multicopper oxidase type 2.
  
  
 0.453
Tter_2238
PFAM: multicopper oxidase type 3; multicopper oxidase type 1; blue (type 1) copper domain protein; multicopper oxidase type 2; KEGG: hypothetical protein.
  
  
 0.453
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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