STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2101N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: mxa:MXAN_0345 putative N-acetylmuramoyl-L- alanine amidase. (638 aa)    
Predicted Functional Partners:
Tter_0633
Hypothetical protein.
 
     0.769
Tter_1564
TIGRFAM: M6 family metalloprotease domain protein; PFAM: peptidase M6 immune inhibitor A; KEGG: acp:A2cp1_0344 M6 family metalloprotease domain protein.
  
     0.743
Tter_2325
PFAM: protein of unknown function DUF402.
  
     0.578
Tter_0339
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bcr:BCAH187_A3673 glyoxalase family protein.
  
     0.564
Tter_2100
KEGG: ccs:CCNA_02196 hypothetical protein.
       0.543
Tter_1143
PFAM: PKD domain containing protein; coagulation factor 5/8 type domain protein; SMART: PKD domain containing protein; Parallel beta- helix repeat; KEGG: hypothetical protein.
  
     0.531
Tter_0755
TIGRFAM: anti-sigma factor; KEGG: tgr:Tgr7_1713 putative transmembrane anti- sigma factor.
  
     0.504
Tter_2102
PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: mca:MCA1441 UbiE/COQ5 family methlytransferase.
     
 0.490
Tter_2714
PFAM: major facilitator superfamily MFS_1; KEGG: ank:AnaeK_3300 major facilitator superfamily MFS_1.
  
   
 0.488
Tter_1855
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: mes:Meso_1800 peptidase M23B.
     
 0.485
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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