STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2111PFAM: cobalt transport protein; KEGG: vfm:VFMJ11_1660 ABC-type cobalt transport system, permease component. (253 aa)    
Predicted Functional Partners:
Tter_2110
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vha:VIBHAR_05108 ATP-binding ABC transporter.
 
 0.984
Tter_2112
Signal transduction histidine kinase, LytS; KEGG: ecw:EcE24377A_3259 hypothetical protein.
     0.980
Tter_2689
PFAM: BioY protein; KEGG: mxa:MXAN_2207 BioY family protein.
 
 0.964
Tter_0370
PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein.
  
  
 
0.925
Tter_0369
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vha:VIBHAR_05108 ATP-binding ABC transporter.
 
 0.912
Tter_0884
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1281 cobalt ABC transporter, ATP- binding protein.
 
 
 0.892
Tter_0882
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: aeh:Mlg_2033 cobalamin (vitamin B12) biosynthesis CbiM protein.
  
 
 0.823
Tter_2745
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: jan:Jann_2056 ABC transporter related; Belongs to the ABC transporter superfamily.
  
 
 0.655
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.493
Tter_2113
PFAM: extracellular solute-binding protein family 5; KEGG: oligopeptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein.
  
    0.469
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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