STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2118KEGG: sus:Acid_0204 glycogen debranching enzyme- like protein. (810 aa)    
Predicted Functional Partners:
Tter_2117
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: jan:Jann_0866 cyclic nucleotide-regulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase.
  
    0.777
Tter_2119
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_7577 glucose 1-dehydrogenase.
       0.762
Tter_1042
PFAM: glycosyl transferase group 1; KEGG: dps:DP2455 hypothetical protein.
 
 
 0.725
Tter_0878
KEGG: alpha-glucan phosphorylase; K00688 starch phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 
 0.660
Tter_2120
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: scl:sce1356 two component system transcriptional regulatory protein.
       0.582
Tter_2121
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ppd:Ppro_2725 PAS/PAC sensor signal transduction histidine kinase.
       0.582
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.487
Tter_2116
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: bcb:BCB4264_A2562 dTDP-glucose 4,6- dehydratase.
       0.413
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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