STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2151PFAM: protein of unknown function DUF59; KEGG: noc:Noc_1484 hypothetical protein. (107 aa)    
Predicted Functional Partners:
Tter_2152
PFAM: Domain of unknown function DUF1858; KEGG: sme:SMa1256 hypothetical protein.
 
     0.818
Tter_2153
KEGG: smd:Smed_6282 hypothetical protein.
 
     0.817
Tter_2154
KEGG: mag:amb3531 hypothetical protein.
       0.788
Tter_2150
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.774
Tter_2155
KEGG: rpd:RPD_4272 copper resistance D.
       0.757
Tter_2156
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mxa:MXAN_5221 hypothetical protein.
       0.686
Tter_0869
PFAM: nitrogen-fixing NifU domain protein; KEGG: dol:Dole_0755 NifU domain-containing protein.
  
    0.543
Tter_1695
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bsu:BSU32680 hypothetical protein.
  
    0.543
Tter_2157
Hypothetical protein.
       0.499
Tter_1699
KEGG: dsh:Dshi_1627 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.493
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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