STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2156PFAM: Cupin 2 conserved barrel domain protein; KEGG: mxa:MXAN_5221 hypothetical protein. (107 aa)    
Predicted Functional Partners:
Tter_2155
KEGG: rpd:RPD_4272 copper resistance D.
       0.701
Tter_2154
KEGG: mag:amb3531 hypothetical protein.
       0.699
Tter_2152
PFAM: Domain of unknown function DUF1858; KEGG: sme:SMa1256 hypothetical protein.
       0.694
Tter_2150
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
     
 0.688
Tter_2151
PFAM: protein of unknown function DUF59; KEGG: noc:Noc_1484 hypothetical protein.
       0.686
Tter_2153
KEGG: smd:Smed_6282 hypothetical protein.
       0.686
Tter_2157
Hypothetical protein.
       0.556
Tter_2149
KEGG: oca:OCAR_7249 copper-containing nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 3; blue (type 1) copper domain protein; multicopper oxidase type 2.
  
    0.440
Tter_1184
KEGG: dps:DP2255 hypothetical protein.
  
    0.433
Tter_2142
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bce:BC4053 GntR family transcriptional regulator.
  
    0.432
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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