STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2165PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding. (168 aa)    
Predicted Functional Partners:
Tter_0592
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: swi:Swit_0704 luciferase family protein.
  
     0.603
Tter_2405
KEGG: ade:Adeh_0026 hypothetical protein.
  
    0.543
Tter_2166
PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: aba:Acid345_4546 transcriptional regulator, DeoR family.
       0.538
Tter_0637
PFAM: sodium/calcium exchanger membrane region; KEGG: dvm:DvMF_1109 sodium/calcium exchanger membrane region.
  
     0.537
Tter_2402
PFAM: glycoside hydrolase family 76; KEGG: hypothetical protein.
  
     0.525
Tter_1330
PFAM: Luciferase-like monooxygenase; KEGG: bam:Bamb_4322 luciferase family protein.
  
     0.520
Tter_1861
PFAM: Luciferase-like monooxygenase; KEGG: sme:SM_b20100 putative dehydrogenase protein.
  
     0.514
Tter_0981
PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_4238 luciferase family protein.
  
     0.509
Tter_2274
PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_4238 luciferase family protein.
  
     0.502
Tter_0670
PFAM: Luciferase-like monooxygenase; KEGG: sme:SM_b20100 putative dehydrogenase protein.
  
     0.487
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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