STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2178KEGG: cvi:CV_4323 hypothetical protein; Belongs to the ComB family. (246 aa)    
Predicted Functional Partners:
Tter_1300
PFAM: UbiA prenyltransferase; KEGG: dol:Dole_2097 UbiA prenyltransferase.
  
     0.615
Tter_2176
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bsu:BSU34710 hypothetical protein.
       0.596
Tter_2177
Two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; response regulator receiver; SMART: response regulator receiver; KEGG: bcb:BCB4264_A4557 DNA-binding response regulator.
       0.596
Tter_2179
PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: mno:Mnod_3911 protein of unknown function DUF21.
       0.551
Tter_0410
PFAM: Malate/L-lactate dehydrogenase; KEGG: sat:SYN_02526 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
  
   
 0.436
Tter_2175
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU34700 hypothetical protein.
  
    0.411
Tter_2174
PFAM: protein of unknown function DUF214; KEGG: bsu:BSU34690 hypothetical protein.
       0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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