STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2196PFAM: carbohydrate kinase FGGY; KEGG: rde:RD1_3760 xylulose kinase, putative; Belongs to the FGGY kinase family. (510 aa)    
Predicted Functional Partners:
Tter_0287
KEGG: pca:Pcar_0240 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.949
xylA
KEGG: aba:Acid345_0903 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
  
 
 0.921
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: aba:Acid345_0904 xylulokinase.
  
  
 
0.917
Tter_2004
PFAM: ribulose-phosphate 3-epimerase; KEGG: bcy:Bcer98_2512 ribulose-phosphate 3- epimerase.
    
 0.911
Tter_2386
KEGG: bsu:BSU04200 hypothetical protein.
    
  0.902
Tter_2534
KEGG: bsu:BSU04200 hypothetical protein.
    
  0.902
Tter_2195
PFAM: glycoside hydrolase family 5; KEGG: aba:Acid345_1689 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.763
Tter_2197
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: bha:BH1248 NADH-dependent dyhydrogenase.
  
    0.674
Tter_2192
Response regulator receiver modulated diguanylate cyclase; KEGG: azo:azo2059 REC/GGDEF-domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver.
       0.501
Tter_2193
PFAM: Hpt domain protein; SMART: Hpt domain protein; KEGG: gsu:GSU1928 sensor histidine kinase/response regulator.
       0.501
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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