STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2199PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: scl:sce5872 putative SAM-dependent methyltransferase. (269 aa)    
Predicted Functional Partners:
Tter_0838
PFAM: metallophosphoesterase; KEGG: scl:sce2733 bis(5'-nucleosyl)- tetraphosphatase (symmetrical).
 
 
   0.697
Tter_2200
PFAM: membrane-bound metal-dependent hydrolase; KEGG: mag:amb4172 membrane-bound metal-dependent hydrolase.
       0.570
Tter_2201
Arabinan endo-1,5-alpha-L-arabinosidase; PFAM: glycoside hydrolase family 43; KEGG: scl:sce1485 putative Beta-xylosidase.
       0.455
Tter_2202
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: galactokinase-like protein.
       0.423
Tter_2205
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: aba:Acid345_1702 UDP-galactose 4-epimerase.
     
 0.416
Tter_2203
PFAM: inositol monophosphatase.
  
    0.407
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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