STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2206Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1861 alpha-L-arabinofuranosidase. (510 aa)    
Predicted Functional Partners:
Tter_2201
Arabinan endo-1,5-alpha-L-arabinosidase; PFAM: glycoside hydrolase family 43; KEGG: scl:sce1485 putative Beta-xylosidase.
 
  
 0.856
Tter_2038
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.851
Tter_2447
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: hypothetical protein; K01195 beta- glucuronidase; Belongs to the glycosyl hydrolase 2 family.
    
 0.810
Tter_2215
PFAM: protein of unknown function DUF1680; KEGG: mlo:mlr2247 hypothetical protein.
 
   
 0.775
Tter_1126
PFAM: protein of unknown function DUF1680; KEGG: sed:SeD_A4064 hypothetical protein.
 
   
 0.774
Tter_2203
PFAM: inositol monophosphatase.
       0.757
Tter_2204
KEGG: ent:Ent638_1249 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein.
       0.757
Tter_2205
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: aba:Acid345_1702 UDP-galactose 4-epimerase.
       0.757
Tter_2202
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: galactokinase-like protein.
       0.699
Tter_2209
PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3413 putative sugar transporter sugar binding protein.
 
  
 0.604
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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